Scaffold Ga0247722_10000081

Overview

Basic Information

• Taxon OID: 3300028027
• Scaffold ID: Ga0247722_10000081
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58020
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (35.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029103	Metagenome	189	Y
F037070	Metagenome	168	Y
F048777	Metagenome	147	Y
F073550	Metagenome	120	Y
F082681	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_1000008129	F082681	GAGG	MIEWIVILLIIFCIIVWHYSQSSSQYSISQIKESQISTSLQTLWEEKKPIVVSEVKTTGIWTSDGLKQTRFWNAQPIWQQYQDAPMTQRQVPSSLQLTWSEILGISQIESDILLRWFDMSPWVFSTRTEAHIGPDGLRHMYGWATAITCTEGEARCILLHNAQKAKLPPGWKGLRWSEATVAHHPLWTQVQNIEVILRPSTVLLVPPHWIVAIEPLDPAKPIWWTRSDLHHPISRWAQGWNEG
Ga0247722_1000008130	F037070	AGG	MSSATAPMNPIGTPYEKGSPTESYPIQSSSTQPFFPPVCLKSHWDPTKIYSRTVPQTLVPLPLDFRPYTKVCLEYRTSAAGQNAPVISDDMVFPQGGKSYPPDRYLRAVDKESLLRRMDRPLGTCDTEQYLPSENGTMYVDGMLVPRSAKPPSRFVEEISMPQALLRAGTYNCRTQADEKNWSRSTRLFNNATKQDRYKGPTEPPRQNIWSDSRRCESSLSNPTQKQLEPNGCRAWGC
Ga0247722_1000008144	F048777	GGA	MIIVSGYLEKSGSKIQGFEASKESNVVLDTSKNTMFPYTTDPIKSLDQYELEAVFENEGDRELKKQQINQLTRQYPLDWVNYPPNSSKFQSGQAKYIEGFSSESSATDLNTPYKDIGDGNLTPPDTAAIEREEKEILATYQPRKTGDMKSYDVYDANKLLEQIYQPKGLKPIVNKRDENVFEVVSTRSIKDKIEYEDDLPDAPATSDNRPGPGEAKIEVPPAALEVAAGRDPFYEPTTSTRSSRTDYMRWTPGLERMFAPTYPITDWVGQAAE
Ga0247722_1000008149	F073550	GGAG	MASKNSASIEMAGVPQLPANSLFDVRLKKDQARQRAYNQILEQALQKVAHSAIAPNQPTFVYFNVPAFVLGLPGLDLKDCIIYLVYQLRSQGYEVRYTYPNLLWISWAHHERQYLMEKNPIVQSMMPPKMAGPEKRRGASQVSLQQAATSSPNAGSSLRAADYTPPAGFVETMERPSPYAKPKQSVRFSDSKDSLGNVLDELWKI
Ga0247722_100000816	F029103	N/A	MRAAVEGFTNPSGAESHRQDPVYAEAIAAILAFTISVLIVSLIGLWLWNFSVVPLFEFARPAKSVFQILGLMLFLSLVHP