NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10000017

Scaffold Ga0247722_10000017


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10000017 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)150724
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (16.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015065Metagenome / Metatranscriptome257Y
F018500Metagenome / Metatranscriptome234Y
F028727Metagenome / Metatranscriptome190Y
F037076Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_10000017111F028727N/AMKTIFIVITFITFIIFFMEAIIHFNIGKNGEHKTHKYIDISDQIKIHIPDKNEFFDIFKTVLFFSSLTGLLSAYVIKNHM
Ga0247722_10000017112F018500N/AMNVNFNITKYTGVMAFYAVITYLLFPVIAYFMFGKTLEAAGNGFIVGSVASVVLWKFYGFGIVKGA
Ga0247722_100000172F015065N/AMSTPTQFKQICTQNDMRLGKNPEMKLFTLEYNYNNPNFSIVSLINVNIHKLLHEVNKDIIDVLDIQPHPTDPSEHNILYQFRDIGGDLGGFKTYMYVNTKIAKRFSSNGNTEIIFTSKSVPYEYHAQLVEQKYKLLEYPLYIQKYIYQESSVTSSPVAAIQVLHMFKLKPDNESELTVAMENAIGILIKKMYFRLKVAIEGLRS
Ga0247722_1000001747F037076N/AMNELRKNNIHMITLDVRISCDTFWDYQFNIPIRINDYYNPSQRNTININNGDHRSNTCEIGNVGRSDPAFLRLEEHLVEYAIQHIYDDLIRKRQQKDIPILLKKARKFHIHGRTLEDLLFPGNSANDHMMPENIVYICTHC
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