Scaffold Ga0247722_10000014

Overview

Basic Information

• Taxon OID: 3300028027
• Scaffold ID: Ga0247722_10000014
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160081
• Total Scaffold Genes: 151
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (62.25%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F009382	Metagenome / Metatranscriptome	318	Y
F009453	Metagenome / Metatranscriptome	317	Y
F010748	Metagenome / Metatranscriptome	299	Y
F015306	Metagenome	255	Y
F022821	Metagenome / Metatranscriptome	212	Y
F025447	Metagenome	201	Y
F062384	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247722_10000014103	F009453	N/A	MASAGTLLSDLDGKAPVLNHKDDDLVNKILADMNLPSSSNPVMNAPSGRMIQDPNPNTTYPVSMDPATATAHMIGKDYPSPADFANMMHSPSYRPGDSSYAPIMSQQAPPTLVEPAKNNMYAEILTQIKQPLIVSIIVFLLSLPIVHVLIGHYVPSLLRIGGDLTTAGLVVKSLLGGFLFWFIQKVLVPLMVVS
Ga0247722_10000014139	F007255	GGA	VRFSRTFYIMTPVWFPWMFVGGILFIVLSFIGAKYKEKEYRSIQFLQDFISGSILIAFTGVLIPDVFPAFPALSMLSLPTQDAFDEMEMVQVGPPRLMRR
Ga0247722_1000001427	F010748	GAG	MTSCLYSGGLNYQQGNPVRQEIVSVRREVDSLRKLVEELTEENLVYRKHLMKLTAEGEKGSEELVKDLMSLAHSSDAKARREAGGGTVQGGGFRR
Ga0247722_1000001439	F025447	GAG	MSDQVPVQGSEYRKQILPVVNVSRTSNPNIDGFADSGLGFFGSPYKPADAMLTPPQIGVQVGDSMESVVNAIKGVGFYTDQIGFGAPSTAFTRGMPLKPLGVNYFIKTGQTCSNGADMWHYMNGIPEGNALGENMKRVMAEMGMPPLQGLAPGMLEDVENALNPSPLINAMFGSGYPRCKQVTLPVGDSYGRIADGSTQESWITDPKTARWNGSSYVQTRWVQDTDNKGNPVNLDRETWARGPITFNADGTPKQQEGFDMLTRPATILVVGALCAIAFAVMRKR
Ga0247722_1000001451	F022821	N/A	MAQWIIESEVIIRAVDKPFGDRQVLGMFSTSDDAYHFIEKYIADTKELHTYFSRSMICSKEEYEDRIRHGRIVAMNVVLGQFEDMIYVRTS
Ga0247722_1000001470	F062384	GGTGG	MGQMAASSMVAMSPLDTVLHLFNTNPYFIGLMMLILNLGGRFIGLEVTKQQEQFLQLPWVRRILIFTVLFVATRSIWVAFWATLGVVLFLGYLFNENSALCLFGTNGKKGSSCEKKEGEMTPEEKEILHRLSSKASRYVVKEDPEEDHVPAKDIYAANMTLLHM
Ga0247722_1000001475	F009382	AGCAG	MDLSTSFPIAWGTEYRAAQRSQPPMKDMFPVRDARYPAYAGVMSDGRQVTDYRPQCSKNVAPHAQFHTKRWMIQHADHLMEEARRRQVEWSGASLPMANTVPPPARVVRSTPFSSVATDTNLKHGHGVERADAQAPPLFGTFSYEPTMSEIQNNRKNIHGTTIQEGGRNSKRGT
Ga0247722_1000001493	F015306	GAG	MSIHNTTPRFEKAKIPRFHRLDVAHISAIEALYTNFPFLRQRMEIHMPFSRARSTFSSGSLWLWPKFDKRPVGYLIFLEGFSPCIWYPERQEGMTFRWLLPPSFSQQGATICLANLLAGESVLQMEDIIVYEGRDLWSHQTFSERWASLRQFWHSLPPDQPLLAFQPRVVTPIPLSEWHLHYHSAVYWIIQTDQARQPRWYWRDVVTVVEHKPVEFIAPVMKRSAEIISVLCALCLPYANMSLPDTYSLVSQEGTSLGMASLPNMAMSLELRGKMVTKGIPVEVVWKPAFQKYQVTRILPEHTPITTASFFFHRT