Scaffold Ga0247723_1038658

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1038658
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1437
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000868	Metagenome / Metatranscriptome	853	Y
F013184	Metagenome / Metatranscriptome	273	Y
F038241	Metagenome / Metatranscriptome	166	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10386582	F000868	AGG	MSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQMYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEA
Ga0247723_10386583	F013184	GAGG	MRSYDFVIKLSGSVMANNEKEAHNKINSHLDDLGAVDSSRYDLGWPDVSWDMEYDLQ
Ga0247723_10386584	F053291	GGAG	MITTQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMIKYMEGIEC
Ga0247723_10386585	F038241	AGGA	MLGYTKEDLDQMSNAVHDAKLFYILNSDIIKVDEDPIVEWLLKTNDFLQGLWAEGYFD
Ga0247723_10386588	F000263	GGAG	MIRHTELQPHLQRMVDAGVSGLDIMHGELKNLMLIAEQDLADALEQEEKSEEAMDSMVRTECEGRLDTLVSLYQLTYDLSFAIGEKNA