Scaffold Ga0247723_1027116

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1027116
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1850
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F005558	Metagenome	396	Y
F015702	Metagenome	252	Y
F031031	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10271161	F031031	GGAGG	MRESKEVSGKQAVHYRNYRRARDRALVRLSHLYPNVYRDLLV
Ga0247723_10271164	F015702	AGGAGG	MIKEIELEYTVHNLVKLSRKVWGDNSTEYLAGRLESIITYNQMKTLIESLKEEAGE
Ga0247723_10271165	F000821	AGGGGG	MNREYLKAKVDLCLTQAEVDIQQQEIARAIKNLERANLALTRIFNLDEEESNDKGN
Ga0247723_10271167	F005558	GAGG	MDKVMSWSEIAELTHATQVEHFNFCLCEDNEGQENPYADCPKEGE