Scaffold Ga0247723_1022716

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1022716
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2085
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038086	Metagenome	166	N
F070856	Metagenome / Metatranscriptome	122	N
F086621	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10227161	F086621	AGGAG	MATVTKDFRVKSGLIVEGSTATVNGKNIITAGVVDAKGDLIVG
Ga0247723_10227163	F038086	GAG	MATTRISNISNPVSIQDIKPTKTLSNIKSFNSTASNVALGTVLTIATLTNTVVISDLIPISSNFQKVDYAKVITPSSVLPFRLTITNIGIEGYDPANPPGIGIQIIGFSNYIL
Ga0247723_10227164	F070856	N/A	MALYRNTDESAMSPQPTAPATYNLGNIPPLVNWTVVVGDSASFRIYVEDDLGNELDYTNDESGDITGWDIKADFRRYSDNVGTDLIFSITPYATVFDDPGEFTVTISPEQSKQLRTGDVFDVQLTDANRVWTVCQGEMIMIGEVTDQS