Scaffold Ga0247723_1019696

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1019696
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2304
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10196962	F013279	AGGAG	MMYDYRCPDCKAELTIERSIHEEPREPSCFECHIPMIRKWDSPSITFKGKGFYSTDK
Ga0247723_10196963	F014590	GGAGG	VRTRHLQLVTHEHSVTIKTKSDVLSPYGPVRAGLTTSQTTPEARLTELLNSLESVVDNLNYKSFTVYDTLTIAMENLRVALSNIATEEDGTDTL
Ga0247723_10196964	F055450	GGAGG	METENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRVRTAEGRGAPVLKEDIHRSTDEGNDGGEA
Ga0247723_10196965	F068766	AGGAGG	MTDNVVGFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ
Ga0247723_10196966	F023834	AGGAGG	MSEPTVDYWRAKAQLCRDLALAQIIDGDEKMEKEAGMNLMRMVHALSMVDTFNEGGSDD
Ga0247723_10196967	F003212	AGG	MKDKWLVTLEIDTYDGDPRHWDWEKLSTGEDVFKLISSDFKGRVLKEESNV
Ga0247723_10196968	F026864	AGGGGG	MSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLATGGGSNWRTALGEALSKIELPTDKVDKTINDVIKEGVEDEG
Ga0247723_10196969	F005558	AGGAGG	MTTDQDSMSWAELAQLTHATQVERFNFCMCEDTEPHEHPYDDCPKGA