Scaffold Ga0247723_1013524

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1013524
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3016
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y
F030063	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10135243	F030063	AGG	MPTSFNTDGKPGFIYNAADDVWYELSGKTDTSGTFEWAGLQTYLSAVTMLEALVAKKGINNYLNPAARDASITSPVAGSICLIRQDSSGNVINQLQYYSGSAWAGVIPSQTGNAGKFLQTDGTIVSWQNAPDAIVTNLMLMGG
Ga0247723_10135245	F010302	AGCAG	MVDVLLNTDDVVVIGPPESIDLLVDIGPQGTRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVETISFTSGAASITIPISNIVTVSGSPLTASNFNVQFQIEGANPIASSMEIPALAGAGTNLVINFDAVQYSGGTWSNLTGSKTVHLFISIV
Ga0247723_10135246	F017131	AGGAGG	MAFPGTYNFNYYRGDRYEFVIRPKTANGGAFDLTGYSANFTVANARGENKTQYEMQAVVDGSADTVTCRILPGAGEVLTAGTYVYDVQIDSGATLVYTLLTGSITVTDDITGADDS