NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1011478

Scaffold Ga0247723_1011478


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1011478 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3386
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F008496Metagenome / Metatranscriptome332Y
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_101147811F008496AGGALTLPPKYDKLLLQPTKEKNVDFPIPATVTQMPESNATFVKEMVEAGDLQPLYDPKATIVVRKGYYYGTPSDAKYDLENADDISRAFWRVDALQSTNNSNSRAHDKLKDYLVENFDEIGEEHATEIANIFGMDLSKTVDVEFNVTIKATISIPVNEDVSDLSVYDFDVEICSNESRYEVDEYDADIDSIDERY
Ga0247723_10114782F007525AGGAMKTYEGVTVEYKEVIPTSRQMPEFYVWGEGYESYATIRYQDRVVEVERGGEMHLTLPYLVNGELTDEGADIIRYSDHLYAEGINDDIQLLQYIKTVGNSGFEIYRMNPWWEVFSHNEDMGEVYDTFYDAIDGGIDYILDDRNW
Ga0247723_10114787F030094GGAGMKLRGIFEGTFESVWSMDVPDYEWKTYLEQNPDFDENDRDDIQEMWDYFKSIGCYDEIDDTVDTDVFMTGIETYGVEVEIN
Ga0247723_10114788F016662GGAGMTYLVATTEVIYSEEALIKMMLATGEYGIHGHPISHEAMIEFVKDNEWQIEHHLFLDKFDVPAQISIKDEDGTDLFFAKNRLEIV
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