Scaffold Ga0247723_1011345

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1011345
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3417
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_101134510	F011646	GGAG	MSNVLELRNGALKRIIFYEVSDAQNIAIWGGESPSEALKWYRSSPLDSKIYVQEWITDEEDAREVSPQIEITSIVLSTIADCMERWSN
Ga0247723_101134511	F018703	AGGTGG	LSNIERRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRAYLEEEIEADEKMGKKWFDITGRTKPADSRSR
Ga0247723_101134512	F022400	AGTAGG	MVLSQIGRQHKMRKIAIESSHKITLRLVSGGKEESGSAYSPFGPVRAGLITTRPTNEVVQLTELLNCLERKITEANIKSLEVLNTYLNDTEHPVKPTSFGLTPNHTITRV
Ga0247723_10113456	F006618	AGGAG	MSKMKQHLEKQINITGKKHEETGWKRYISFEYEGNEYELTLFWDEFNGFETYWRVPDKTPNWVIEWNEEDNSGMSFELYLDDLTWESK
Ga0247723_10113459	F011756	GAGG	MSEPRCLFGDDYAYNGGYEELINCNKCDVMFDRAEYQSDTCSNCEDIMIAKMKEGVSK