NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1010751

Scaffold Ga0247723_1010751


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1010751 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3549
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F018135Metagenome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_101075110F003212AGGCGGMKDKWLITLEVDTYDGDPAKWNWTDLVGDESKVIESQFKGRVLPTSEGESK
Ga0247723_101075111F018135AGGMMTVERVRHSGAIIVSQFIGEGAGEYLFSRTYYGYTMAQAKAQFKIALKAVA
Ga0247723_10107516F003863GGAGGMESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINSDSRLTVGVHTRANATPAFTSSTGDEGENEGNNGGEA
Ga0247723_10107517F001477GGAGGMNNIYTIHPPKSDLILFYEVTTPEGENTWGGADAGQAIQWLAHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL

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