NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1009526

Scaffold Ga0247723_1009526


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1009526 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3878
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F015209Metagenome256N
F015472Metagenome254Y
F027516Metagenome194Y
F057375Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100952611F057375AGGMAETVYFVNASDVFEAIELGDFEQAQFLDQFTYGDSLTDLTLIKKQTFVNRLVKFIGECEDVYEKDEMMQNLKEYNFGLLDCIKHVNIDE
Ga0247723_100952612F027516GGAMTYQDYIIKCEVAKTVFKCNVSSALIVENISPEMRLKWITEDLAKLEKELEEIGKAFDEQDEVRDPFLGLKVK
Ga0247723_10095262F004583AGGAGMKSTRNSDRLRDILVSTRHQIVALKDIQIDLLRHDAKVANQVATQISALEEVYKHQLSLVTLAENVEPKRAGWFSGQIKTKEDRLANIMD
Ga0247723_10095268F015209AGGMNSYRHKALSLWSALLAEERWHQFESTNCKPSCKGWNGWAPLCECGKNYCTFKPSGNIEVMQLVIEARPLDF
Ga0247723_10095269F015472AGGAGMAHYYLNQGGTRWVTDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFAVCYVRVADNVYRGFTEDNNGVIELKLEKCYRVR

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