Scaffold Ga0247723_1009526

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1009526
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3878
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F015209	Metagenome	256	N
F015472	Metagenome	254	Y
F027516	Metagenome	194	Y
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100952611	F057375	AGG	MAETVYFVNASDVFEAIELGDFEQAQFLDQFTYGDSLTDLTLIKKQTFVNRLVKFIGECEDVYEKDEMMQNLKEYNFGLLDCIKHVNIDE
Ga0247723_100952612	F027516	GGA	MTYQDYIIKCEVAKTVFKCNVSSALIVENISPEMRLKWITEDLAKLEKELEEIGKAFDEQDEVRDPFLGLKVK
Ga0247723_10095262	F004583	AGGAG	MKSTRNSDRLRDILVSTRHQIVALKDIQIDLLRHDAKVANQVATQISALEEVYKHQLSLVTLAENVEPKRAGWFSGQIKTKEDRLANIMD
Ga0247723_10095268	F015209	AGG	MNSYRHKALSLWSALLAEERWHQFESTNCKPSCKGWNGWAPLCECGKNYCTFKPSGNIEVMQLVIEARPLDF
Ga0247723_10095269	F015472	AGGAG	MAHYYLNQGGTRWVTDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFAVCYVRVADNVYRGFTEDNNGVIELKLEKCYRVR