Scaffold Ga0247723_1009132

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1009132
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4007
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F022197	Metagenome / Metatranscriptome	215	Y
F023106	Metagenome / Metatranscriptome	211	Y
F040623	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100913212	F040623	AGAAGG	MKVRISLEQTIDLEDAMSNDIGFELYGPPDMSTEDKVDYLIARFAEDIDTMVKYDEVLGNISVEYIED
Ga0247723_100913214	F007691	GAG	VNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIALYAGIEVG
Ga0247723_100913215	F022197	AGGA	MTLETETMEDPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFIPELGEWHTK
Ga0247723_10091323	F023106	GGA	MRISRRVTEEEKVANKIGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYGKNNF