NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1008836

Scaffold Ga0247723_1008836


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008836 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4104
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002037Metagenome / Metatranscriptome600Y
F003066Metagenome / Metatranscriptome509Y
F011384Metagenome / Metatranscriptome291Y
F019123Metagenome / Metatranscriptome231Y
F024784Metagenome204Y
F030690Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100883611F030690AGGAMQRSEVEIICNHMLGKTIVSCEALHGDSTIVIQLDDDSLIEISGEELSLYGELTPLDD
Ga0247723_10088364F003066AGGAMAKKEPVAWLYEEFDIRSGDLKASYLWSFHPKELSYLNDLKNSTHHIKITPLFRGDKIEEYKSMNKYSEETQRLIESNNGL
Ga0247723_10088365F019123N/AMDSKPLTQEEIIKIYKAAFGYGSQVVTLDRIFKFARLLEQAHGVKDVY
Ga0247723_10088366F011384GGAGMYTKLDDQRQAKFIINYINQHPGCSIKSIVQECVTNRTRLKYLESQGYFTLPKWTYNNTLDKRFKNRNYVSVTVGREYGKWEEQKRY
Ga0247723_10088367F024784GGAGMGRAEKILDVVVWLLVIGSILGFAYGTYELIDLFFIRG
Ga0247723_10088369F002037N/AMAALAIFYTEQSFGQTTTILAPDGSVTVCQVGSNGIVICV
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