NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1008531

Scaffold Ga0247723_1008531


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008531 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4210
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013279Metagenome / Metatranscriptome272Y
F014590Metagenome261Y
F023834Metagenome208Y
F026864Metagenome196Y
F055450Metagenome / Metatranscriptome138Y
F093483Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100853110F023834AGGAGGMSEPTVEYWRAKAELCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDAFNEGGSDD
Ga0247723_100853114F055450GGAGGMDAESKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTIPVVGVRVRTADGRGTTTIKEDIHKGTDEGNNGGEA
Ga0247723_100853115F014590GGAGGVRTRHLQLVTHEHSVTTSNRSDALSPYGPVKAGLTTSQTTHEARLTELLNSLENVVENLNYKSFTVYDTLNTATENLRVALSNIATEEAGTDTL
Ga0247723_100853116F013279AGGAGGMQYDYRCTECKAELTIERSIHEEPREPSCFDCHIPMVRKWDAPSITFKGKGFYSTGG
Ga0247723_10085312F093483AGGAGGMTVEKTYAGALVVSALVSWEGVKFLESSTYYGYTVAEAKKSFRESCERLKYEIL
Ga0247723_10085318F026864AGGAGMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLATGQASNWRTALGEALSKIELPTDKVEKTINDLVKEGTEDEGQVASND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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