NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1008186

Scaffold Ga0247723_1008186


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008186 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4352
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004110Metagenome452Y
F009331Metagenome / Metatranscriptome319Y
F013279Metagenome / Metatranscriptome272Y
F046686Metagenome151Y
F056431Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10081861F046686N/AYGPVRAGLTTSPTTQEAQLLELLSSLENVVESLNYKSFTAYDTLVIATEGVRAALSAIVTDEAGTE
Ga0247723_100818612F056431N/AFGAHTADGSKYAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV
Ga0247723_10081863F013279AGGCGGMQYDYRCPDCNTDITIERSIHEDPREPSCFDCHIPMVRKWDSPAITFKGKGFYSTGG
Ga0247723_10081865F004110AGGMTELHPVIYDLVPSVANTIYRRYKTHVERDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEVYYESANLGQLLPFVIASIIEGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKRGYLKLDQDDQAILRMRHHESFTLQQIAGVLECAISTADRRCAQSLRRLQDNLGGVSPWQ
Ga0247723_10081868F009331GGAMICQNCHKAGEENTLTHYKRSAHWHDKCDDKGCVCQHKTGPGYVKRDGSKVPLMQTQSP
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Institute for Fundamental Biomedical Research
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