Scaffold Ga0247723_1007245

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1007245
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4728
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100724512	F018135	AGG	MTVERVRHSGAYVISAFVGEGAGEYLFTRTYYGYTLRDAKAQFKLALESEGK
Ga0247723_10072453	F017972	GGAGG	VRTRHLSLVTQRHSVTTTTKSSAYSPYGPVSPGSTTLLAQETLRANQEAQLLELLNSLESVVDNLNFKSFTAYDTLVIAMEGVRVALLATPIEEGGTK
Ga0247723_10072454	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKTWIIDSNSRLTVGVHTRANAVPPFGDPADAGEDEGYDGGEA
Ga0247723_10072457	F003212	GGAG	MKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIETQWKGRVLPTNEGEGNE