Scaffold Ga0247723_1007125

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1007125
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4783
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.BinA052 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013412	Metagenome / Metatranscriptome	271	N
F016253	Metagenome / Metatranscriptome	248	Y
F039136	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10071251	F016253	AGGAG	MSDRIQSIIKGGTGVYSISKKEAGEIHKAAKKVKNYAVSYWTRNRKNKEAK
Ga0247723_10071255	F039136	N/A	MTIEIKYTASVYTPAGWRGVTITAKATKTSEKMALVVEVLEINGESPKSSMSRTGASRQRFNGRGISCCEVGAKKRLSACEILN
Ga0247723_10071258	F013412	GAG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKPYAQRVTFRSFDSEDMDAVNLLIEGTHVMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES