Scaffold Ga0247723_1006923

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1006923
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4870
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038679	Metagenome	165	Y
F045097	Metagenome / Metatranscriptome	153	Y
F060913	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100692315	F045097	N/A	MKTDDVKGKMIEAIPYVAVFGIAALAAYGLTKLLQATKELDFPLDFGYDEYLDKVIDEQG
Ga0247723_10069232	F060913	GAGG	MIKVYQIQLTDAEVAAVNNGETSDRIKAYFDRSFERTFKAENFQHYDHVANVATDDMEEAFALMNLWEDETKVEKLGPCSSMSVGDILDVDGTLFRCASFGFEAI
Ga0247723_10069233	F038679	GAGG	MTEVAKKNMFLETVKWAGTACVVVAATCRAFDYHTVDLLVSIAGAGLWGYAGFAMKDKALIAVNAFVVGILVVGVVV