Scaffold Ga0247723_1006922

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1006922
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4871
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F010320	Metagenome / Metatranscriptome	305	Y
F015599	Metagenome / Metatranscriptome	253	Y
F018924	Metagenome	232	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100692212	F015599	N/A	MRLTIKNYEKLKRKAWDDKNYIEKIIEKIDRYEISVWRESMRQYIILDRDPVENGYYKIGKWSNVTYGVRYPYWIKHEDIVNINSLMDKLKLMTD
Ga0247723_10069223	F010320	N/A	MNYYQIVAFTQKLKKENMNKNNDAFINDAYNEESKLYSEFMDEVKVHDYSYMMSDDHNVYMRGRNNEKQIQEKLHALIGICRYDGHDLLDEVISVVPQRYNDVDSNGNDLTHRVIRGWFKPYVFDNFEL
Ga0247723_10069226	F002092	GAG	MNKKTIEYLNSNSIVNDFINKVNIQRQDYYVKADMPSQYQPIVAEVGQKYIRLWVGTGCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTAKYGMYGPDYL
Ga0247723_10069229	F018924	N/A	MTNSEKAIAQLFGVLCSIVKSEHTPQATKQATISTFQHLIGEDGSPFLEEELIQLSTAMDDEMQSIVRQLNGDRILNNVLTNNINLN