Scaffold Ga0247723_1006689

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1006689
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4992
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F009960	Metagenome	310	Y
F014137	Metagenome / Metatranscriptome	265	Y
F017132	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100668911	F006935	N/A	MDKRYAKQIIEWAEEAKETLTIRKEIIIDNSVNNEQLGIIIRQMYKAKVEAQDEQIKHTKQNTK
Ga0247723_100668914	F017132	N/A	LFTISSKYFISTNILEIMRKIETAKVGDDLYEIVKKLPIQRFSKEVTGEYAEALKKYYGVEKILKFHQTQEYLFVNLIEELQIITNDNKETSESN
Ga0247723_10066892	F014137	GGA	MLTIKNIQTIIGETYNEVFNIIGVKEETWYYEFTLGYVTVGKPRYETILLHRKQTDNGMYIMEYNNKTLWLNTNEFDTIDKIIICMQTI
Ga0247723_10066893	F009960	N/A	MLILKNIEKINGYSLNVKGKGWYFKGWDNTTSEVTHFSIREVSPPHLVRKNITLHKKGRLSTDYIQNMSCYIYGIEVDGLTFYFTKEKLNTPAAFRDTIEQILNGI