NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1006518

Scaffold Ga0247723_1006518


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1006518 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5087
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003212Metagenome / Metatranscriptome500Y
F004110Metagenome452Y
F017972Metagenome237Y
F027417Metagenome194Y
F044984Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10065181F004110N/AVIYDLVPSVANTIHRRYKAYVEKDDIKQELMAWAMTRSDDHTVDLMEPIEDRRKHNEQRIAWQMRRVAERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGGNLLANLIDIKRGFLKLEQEDQAILRMRHHESFTLQQIAQVLECAISTADRRCAQSLRRLQDNLGGVSPWQ
Ga0247723_100651810F003212AGGAGGMKDKWLVTLEIDTYDGDPRWWDWEKLSTGEDVIKIIETHFKGRVLPANEGESNE
Ga0247723_100651812F027417N/AMNYDYRVTFVTDYLTITTNVSLELDEYTGNLSDEAYGRAAVKGMNNVEDEIGKINETIINDITVTLILDDEEVELDAL
Ga0247723_10065186F017972GGAGGVRTRHLQLVSQEHSATTETRSTALSPYGPVSPGSTTLLAQETLRANQEVRLLELLSSLESVVESLNYKSFTAYDTLVIATEGVRVALSNIVTEEAGTDANRS
Ga0247723_10065187F044984GGAGGMETNRRTQTATRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWIDIDGTTVLSLGVHTRANGANDLAHTSNAGANEGNNGGKA
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