Scaffold Ga0247723_1006471

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1006471
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5120
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F033405	Metagenome	177	Y
F046899	Metagenome	150	Y
F061801	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100647118	F061801	GGAGG	MKTKPIYKDYDREVYLSEYVRLHREHYRRLTFCAVVSVGINIFLLLVMVIR
Ga0247723_10064712	F046899	AGGAG	MSNTSNFSPSARVAIKEFEAWQMKVFKKNAKKGWRFFNPDHFDKPTPRSAREAWGAPYKQDDFAKNEDRNSKIMFAIVVAVLLLLSVI
Ga0247723_10064714	F033405	GGAG	MISKKTDEQLIEAVNQYMEKYPNATRNHIVLHATGSATRVRELAKQGLIKLPKALPKGANTNWNGYFNTASETNAKKQGMKYNV
Ga0247723_10064715	F014840	AGGTGG	MIPFSYAVVDDEGEVIRKHRWSVKEAKWFTENNPDVKVIKLDKPIEIKEDLFKLVGECLF
Ga0247723_10064718	F012016	AGGTGG	MQETLKQPYAWSTEEFNVNGELVWSSITQFRPKELSWIRDLPNKKHYITITPLYKDESKAEKITGIKSYKESTQKMMEAYNGL