Scaffold Ga0247723_1006019

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1006019
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5369
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011078	Metagenome / Metatranscriptome	295	N
F037638	Metagenome / Metatranscriptome	167	N
F070031	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10060193	F070031	AGG	MRIIDRRRDEQLGTKAKGLPMYKEFIQLVEKDKRVQSYYNMKDMLLDAFKWDKTPQGHEYWQSVYDSIVIADHPKCPQCNTIGKVKLLKTANKHKCNKCKITF
Ga0247723_10060195	F011078	N/A	LELSKADWLKKATKNIAKNNELARELYQFYFLTILEKPDEQIEKIYRDGYIQFWSIRLLYLCINGNRHPFGESRIYDQHDVYELDFAEEIDLLDEREQAEGIELERINKINQVTESAYFYERELFKLWCSGMSARAIHRKTDISVREVLRVIKLMKERCITK
Ga0247723_10060198	F037638	N/A	MSNIEFILSLQPLYDNWKKTQVFNPTPEQGAILNNVHREIFGRNLPNCSTCITEALHSLLIWANQQQEAITKAQLADDEQKPKRRRKNESNP