Scaffold Ga0247723_1005759

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1005759
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5525
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10057591	F025459	AGGAGG	MKMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHECGAFAKLDEDTMEAVRAWIWE
Ga0247723_10057592	F048162	N/A	LKKKRQPTVESERTEALAEAKRILSEHYDCGFTIVSWEQGGETMHGEFVFGNKYAVEGLASDSFSILFPDLEEEEEEDEA
Ga0247723_10057594	F011668	N/A	MNAKKIALWMIVLSFAFLGMAFLTSCAGFNNPALCVKTDYGTFCYELPDIQGLKK
Ga0247723_10057596	F034182	AGGCGG	MNGHTFHSLVGTSAPAAAVLISFSEVEAWLRIASLILGICIGAVSLYKMLKAKKP