Scaffold Ga0247723_1005708

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1005708
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5559
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F003784	Metagenome	468	Y
F009331	Metagenome / Metatranscriptome	319	Y
F014590	Metagenome	261	Y
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100570810	F068766	AGGAGG	MTTDNVVGFHPKNKLVNFYEIATEDGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAEEEDARLIIEPIDITKIVFAVLAGAQ
Ga0247723_100570812	F023834	AGGAGG	MSKPTVDYWQAKAELCRDLALIQIQDEETEKEAGMNLMRMTYALSMVDAYKEEGDGQ
Ga0247723_100570813	F003212	AGG	MKDKWLVTIEIDTYDGDPKMWDWNYIFTGEDDVKVISSDFKGRVLKEETNV
Ga0247723_100570814	F026864	AGGAG	MSEQEKTAQFVFTVVVIPDNKRYEVELWDFSGTKPDLIAAGEGTNWRTALGEALSKIELPTDKVEKTINDLVKEGVENEG
Ga0247723_100570816	F020863	AGG	MQTTMEEIRNLVAMLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAFRIHFSGGSKYGSGHYEPRGFSDYLGGSKAEAAQSLRKLIAGIHTGLMIAEKKEVKA
Ga0247723_10057082	F009331	AGGAG	MICSNCMKAGEENTLSHYKRASNWHDKCDYKGCVCQHKTGPGYVKRENSKVPLMQTQSP
Ga0247723_10057084	F003784	GGAGG	MYDDDRKRVGHNVTDFAAYGLSHLVPGQDERDDINTPTTNPLVDHAAVTGYREAGVTTEDLTSFIESFASLRAHRVRGVGHDQYSHAKGQKFESFTTSDNIKELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD
Ga0247723_10057088	F014590	GGAGG	VRTGHLSLVTHEHSVTVSVKENVSSPYGPVRAGLTTSQITPEARLTELLNSLESVVENLNYKSFTVYDTLIIATENLRVALSNIATEEDGTDTL
Ga0247723_10057089	F055450	GGAGG	MEANNKRLVGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLNGNTVPVVGVRVRTTDGRSGPVLKDTLSKGKNEGNDGGET