NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1005649

Scaffold Ga0247723_1005649


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1005649 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5605
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014725Metagenome / Metatranscriptome260Y
F026578Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10056493F014725N/AMENNKKKLSFAYDLSNLPVYNSYGSDMLIKAILGLTLPKYASIRANLKGTTEKVGFVTNDIYLQDLSCGFDPSGTTTQSLVTVDLCNKKLNQTLCPYSLYDTYLSQSLSNANFQETVPFEEVILTDISNRIANQVEKQLWQNTTTTGGTYGSACFAGVGQLITSGNGATQIAYSAATPSNGLDVFTTIYQNIPANVLHLDDLVIFTSYSNYRGLVASMRNNSFVNLFTMDTAGSTSGEDWALMLPGSNVKVIPTVGLDGVNAYYAGPASYYMVGMNAEMQTIKAIYDPFEDIVKINAHVTYGLGIFDVASFCLCK
Ga0247723_10056494F026578N/AMASCYISTGYTLDCRTSSTGGIKTMWVLGGSGNTITGYTVTNSQVTAIGGTGTWFKFELPKQSGSLSETLGVNTTSQSVTFQPEIVVNLPKLNTQLRDTFVDLVSQNEIYALIEDNNNRYWLVFLDNGGLVTAGSLNTGQAYTDLNGATALTMTGGEPTSIREVDVTTTIAAVFTTGGFTFQS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.