Scaffold Ga0247723_1005646

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1005646
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5606
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029046	Metagenome	189	Y
F066470	Metagenome	126	Y
F093236	Metagenome	106	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100564612	F029046	GAGG	MQLQEVDTIQDLRLWVEENMQGATVEEGEAGIIIRTNLGSAMGGYLYEREGEE
Ga0247723_100564614	F093237	GAGG	MPYKYDLGNTRDMSSQELLDALLAREIAPRTIVGTGYKNGRQVAIDYLKERIAKESEGK
Ga0247723_10056465	F093236	GGAGG	VKTRHLSLVTSEHSDTISLREDVQSPFGPVRVGLTISQTTQDHQLSELLSSLESAVESLNYKSFTLYDTLNTAIEEISAALSNTLTEEDGTDV
Ga0247723_10056466	F066470	GGAGG	MTEIARRIETAKRSAVIYRNYRRARERALTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTSQSMDLDSSSSPTGGRGSEQASSGPDKGNDGGEA