Scaffold Ga0247723_1005624

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1005624
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5615
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009331	Metagenome / Metatranscriptome	319	Y
F011484	Metagenome	290	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F059896	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100562410	F023834	GAGG	MSEPTVEYWRAKAELCRDLALAQIIDGDEKMEKEAGMNLMRMTYALSMVDAFNEGGSDDN
Ga0247723_100562413	F055450	GGAGG	MEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTVPVVGVRIRTADGRGAPVLKENIHRSTDEGNDRGEA
Ga0247723_100562414	F017972	AGGAG	VRTRHLQLVTHEHSVTIKTRSDVSSPYGPVNPASTTLLAQETLRANQEARLTELLNSLESVVDNLNYKSFTVYDTLNTAMENLRVALSNIATEEDGTDTL
Ga0247723_100562419	F009331	AGG	MICNNCMDAGVENSVAEYKRATKYHNKCNDKGCVCQHKTGPGYVKREGSKVPLMQTQSP
Ga0247723_10056242	F059896	AGGCGG	MDKCDKCENMARITVSGYIVARYLCAKHAGELCLSVGDIAGRDKFLALEEGDRVA
Ga0247723_100562420	F016642	N/A	CTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTSWNVPWYPNELHPRRAKLPDVGNNFEVRTVRTRDSIPFWNKDNGKIIVGTKIIDEDYYSEVEVYGWCNPEEYAKAQYRDEAIGGWRVPVTELKGF
Ga0247723_10056246	F011484	AGGAG	MRELEQFLNVEAEWVLERLSTSTEANDRNYYQGRIDQLAQVRRLLNHPQILREEKTA
Ga0247723_10056248	F026864	GGAG	MNEQEKTAQFVFTVVVIPDNKRYEVELWDFAGTEPKQLSTGGGSNWRTALGEALSKIELPTEKVEKTINDVIKEGVEDEGV