Scaffold Ga0247723_1005579

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1005579
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5642
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001125	Metagenome / Metatranscriptome	769	Y
F003422	Metagenome / Metatranscriptome	487	Y
F007644	Metagenome / Metatranscriptome	347	Y
F017829	Metagenome / Metatranscriptome	238	Y
F033037	Metagenome / Metatranscriptome	178	Y
F038241	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10055791	F033037	GGAG	MKPEDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTI
Ga0247723_100557910	F000311	N/A	MYFELTAPNRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDKEATGY
Ga0247723_100557911	F003422	GGA	MSVGSCIILPMTNELISSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSNQTKEEKMETTIGSDALHSPAVPYDANLLVTYKVLHGYSDPEYTTSKVASLEWDLHNGRQSQKTASLLQSKINNAKDIIAEAYADSSDQDTLRSIAEALGIELTRTIEFTCSIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA
Ga0247723_100557914	F017829	AGG	MANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGRVNAYVFDNVKKKKTTAMFLDESTVEFNKNLISNAKKVEVGI
Ga0247723_10055792	F000263	AGG	MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARTL
Ga0247723_10055793	F007644	N/A	MTKSSQFMEYMKLHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNSTNERVY
Ga0247723_10055794	F038241	AGGAGG	MLGYTKEDIDQMSNAVHDAKLFYIRNSNVEQVDQDPLVEGLLKANDFLQGLWAEGYFD
Ga0247723_10055795	F000868	AGGTGG	MSDPHGIIGNYRKGGSMSFLENENEMLIDAIYSEIGEQLVEDWVNSNLDEGQLYADWCVADMSNNNYLKGRFNQFYDLGPTDTYYLQWDEEA
Ga0247723_10055797	F001125	GGCGG	MGDRANFGFRDSKENIVFLYGHWAGYRMLENLADAVQAASPRWNDESYATRIAISNLIKDEWSSETGWGITVNELADNEHKVPIIDWKNKTFTLMEEDLKTVVFSTTLDAFVAKYSSQLSMV