Basic Information | |
---|---|
Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1005170 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5933 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F036672 | Metagenome / Metatranscriptome | 169 | N |
F067688 | Metagenome | 125 | N |
F103159 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247723_10051703 | F036672 | AGAAGG | MKFWGEFHALIWTIAASVTTILTLSGTLQQIVIWLTLAALVLHFIGAFTNKDNE |
Ga0247723_10051706 | F067688 | AGAAGG | VDWGVVIAALVTAVGGIVTTLLLKVKSENTKDHANVMEILRSVGGKVERIDSKLDSHIDWHLKEATGGEVPKRN |
Ga0247723_10051707 | F103159 | AGGAGG | VGKFLNEIKGQAVGNSGSLDSILAKLGEADGQDLLDALNDPTIRPTQIIKALQARQIKLSASVITRYRFAHVVTK |
⦗Top⦘ |