Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1004822 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6236
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6236

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013634	Metagenome / Metatranscriptome	269	Y
F025485	Metagenome / Metatranscriptome	201	Y
F031456	Metagenome / Metatranscriptome	182	Y
F051709	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100482213	F025485	N/A	MENVRKFLPVIIGGIVAIAVFFISRKVRQSSGNIQERSQILEKAREAKLAKSILRKSDEDDTQSIAI
Ga0247723_100482215	F013634	N/A	MAIQLAPLVGAGLGALQQSKIDKALAGEKTYTKPKTIFGKLIGGVSGRTAAAEASAQTKTAPLSESVMNSLQPSAKSTPITGGFSFGGEATKRTYLPFYLGAVVLGIFFFMRRKGGRRRR
Ga0247723_100482216	F031456	N/A	MALIGSFPASSSAVFNLDFLPEKFLIGTANADTQSLTNFSVVTSGVQLMSITATNRITALAKFDSGAILSQPDGTGVASETSSYLRLATGRINKATTITGVNGVASVVSAYAASTNISNVARRAVEQSINPSANATFDNFEALIFPGGNVLRAQITFANGYTDEYTVPELLALYSNYHVSDADGTLNGQVVIDADSGAGLISQVVLFAGSGAAVVVLKSDYVQL
Ga0247723_10048223	F025485	N/A	VENARKYLPLIVGGLVAIALFFVSRKMRKGEQTNTERSTILEKAREAKLAKSILRKTEEEDDSQSIAV
Ga0247723_10048225	F013634	N/A	MAIQLAPLVGAGLGALQQSKIEKALAGEKTYTKPKTIFGKLIGGVSGRTAAAEASAQTKTAPLSDSVMNSLQPSAKSTPITGGFSFGGEATKRTYLPFYLGAIVLGIFFFMRRKGGRRRR
Ga0247723_10048228	F051709	N/A	MIPNKERLGIEVAIRPHIQAVEVINLELQKVNGSIERKWRQLDDFSASWSYTMWQNWKDAMQGEISYREYLLIILEAYRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1004822

Overview

Ecosystem & Geography

Associated Families

Sequences