Scaffold Ga0247723_1004777

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1004777
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6290
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F004110	Metagenome	452	Y
F013279	Metagenome / Metatranscriptome	272	Y
F017972	Metagenome	237	Y
F027417	Metagenome	194	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100477712	F003212	GAGG	MKDKYLVTLEIDTYDGDPRWWDWEKLSTGEDDIKIISSDFKGRVFPTEGEDNE
Ga0247723_100477715	F027417	GGAGG	MNYDYRVTFVTDYLTITTNVSLELDDTTGNLSDEAYGRASVKGMNNIEDEIGKIDETIINDITVTLILDDEEVELDVL
Ga0247723_10047772	F004110	N/A	MVSGLVTELHPVIYDLVPSVANTIHRRYKAYVEKDDIKQELMAWAMTRSDDHTIDLMEPIEDRRKHNEQRIAWQMRRVAERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGGNLLANLIDIKRGFLKLEQEDQAILRMRHHESFTLQQIAQVLECAISTADRRCAQSLRRLQDNLGGVSPWQ
Ga0247723_10047774	F013279	AGGA	MQYDYRCTECNAELTIERSIHEDPREPSCFDCHVPMIRKWDSPAITFKGKGFYSTGG
Ga0247723_10047777	F017972	GGAGG	VKTRHLQLVSQEHSDTTSERESVLSPYGPVSPGSTTLLAQETLRANQEARLLELLSSLESVVESLNYKSFTAYDTLVIATEGVRVALSAIVTDEAGTKC
Ga0247723_10047778	F044984	GGAGG	MTDEASRRTQTAARKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSLGVHTRANGANDLAHTSNAGANEGNNGGEA
Ga0247723_10047779	F001477	AGGAGG	MSREFITKAHYPNLYTIHPKKSELILFYEVLTPEGENEWGGANAEHCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDITEIVRAASL