NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1004708

Scaffold Ga0247723_1004708


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1004708 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6356
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022870Metagenome212Y
F024101Metagenome207Y
F033009Metagenome / Metatranscriptome178Y
F042303Metagenome158Y
F063633Metagenome129Y
F072279Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100470810F033009AGGAGGMQNNSTQLWWAGEITQFGDMQKFYDVNLWTMESKDGSYASVILDGEMIKSFRCEGAWDLARKLAESHLLKREQLEQEGWVTA
Ga0247723_100470812F024101N/AMVDEVFDKELETELFDEIVEERNFIVNTLKTWIETDEIWEQMVENKEQRKMFLMQMQMLFLTELENSTLIELATTKHGDE
Ga0247723_100470814F063633AGGMAHTYKDRKVQHVQGLRRSGASGIHKNKIKDRQKRLSNATIWKDYIKENENE
Ga0247723_10047082F022870N/AMGTRPTTQFRDRLGIRKRGRQMKLTQRGKYAVVIGYTIIMTLLLVGVWNKYDKKGCVDKYTADILATQFLYGEGIDVDRAMTAIYNNGGWIEEELTPDVEVIFPCLKNEGLV
Ga0247723_10047083F042303GAGGMINIYSKTYYRIENTKYHLSNALDTIKYHVSNVVDTIRYAHDETWLAIALVTTWVLCAYIASVN
Ga0247723_10047086F072279AGGAMTYSRQHFQQVASILNQFKDELPQTTFEEIVMEFGDLFLANNERFDDAKFQAACGITWPTFVRL
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Institute for Fundamental Biomedical Research
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