Scaffold Ga0247723_1004697

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1004697
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6373
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F002515	Metagenome / Metatranscriptome	552	Y
F021757	Metagenome	217	Y
F083720	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10046971	F083720	AGG	MSANIYSIQSLLVGTNYNSRTLQGEIVSAEPHPKAVWYEGCDTYLVEVEPNSGYNNWGKRTYRTVAVRTS
Ga0247723_100469711	F002515	N/A	MKKTPEELRRLMELRRSGATLPVPNKKKYNRKKRQSSLLQLKKESE
Ga0247723_100469715	F000684	AGGA	MSIQGYTYQIGDLFTTSKTGITGRIYSFAPQSKTVTRVGLQLANGSKRFAMVKTSK
Ga0247723_10046974	F021757	GGTGG	MMTRKDYVAVAEILSDFREGIQNQILFDEMVDEFADFFSADNSNFKYDKFREACNE