NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1004457

Scaffold Ga0247723_1004457


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1004457 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6621
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042295Metagenome158Y
F043830Metagenome155N
F082375Metagenome113N
F090290Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100445715F090290AGGAGMEKHLPYTTKSGLRIGCMYSPPPQNHMSADAERIQMALLGIEPEYSERRVVGFIAYIIFLMALFTILFALEL
Ga0247723_100445718F042295AGGAMSYASSKKKYAEKTTPEGFSGPNSHNCFANGCPMAGGISTGGNWVCAYHHQATSDMWPRVTQALRDCEKIRLAINEVMKIDMISWGSATNGYPPKWQEFAALFDNEPELQPTDHEKIRKTKYEYRLRNELAIRAGLAKRKS
Ga0247723_10044572F082375GAGMTPKQFVNELFGEDWKPSQLPVLLEKLKVWSEDAQRYYVVRDFVKLEFNENPRDRKECHEFDDLVDAKRFEQEL
Ga0247723_10044573F043830AGGMVVSMNPYLNTNEIKEAFRKIYLEENYDFLEEDLIKLADGFIMAAMPAIVKTEREMCVKFVNSLNTNVARALGEYRENL

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