NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1004136

Scaffold Ga0247723_1004136


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1004136 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6989
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003456Metagenome / Metatranscriptome485Y
F003863Metagenome464Y
F009331Metagenome / Metatranscriptome319Y
F017972Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100413610F001477GAGGMSNIYTIHPPKSELILFYEVVTPEGENEWGGASAEQCMQWLTLAPNGSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREIGR
Ga0247723_100413611F003863GGAGGMENRQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANTPPPFGDPADAGADEGDDGGEE
Ga0247723_100413612F017972GGAGGVRTRHLQLVTQKHSVTTETRSIVSSPFGPVNPASTTLLAQETLRANQEARLLELLNSLESVVENLNYKSFTAYDTLVTATEAVRVALLGTHNDEAGTDPVH
Ga0247723_100413620F009331AGGAMICQNCLKGGEENTLAHYKRATNWHDKCDFKGCVCQHKTGPGYVKRDGTKVPLMQTQSP
Ga0247723_100413622F003456N/AKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAQVEALNYAKARGLGEVPLSYVIVKRRNASIDQAWVIQDLAQWLKEKQ
Ga0247723_10041367F003212GAGGMKDKWLVTLEIDTYDGNPKNWNWDNLYIGEENIKIVETQFKGRVLPEEGEGNE
Ga0247723_10041368F000821GGAGMNREYLEAKFDLCINQAEKNIQEEEIALAIANLRRANSALSQLFGFEEGDDNEN
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