Scaffold Ga0247723_1004132

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1004132
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6999
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007518	Metagenome	349	Y
F039525	Metagenome	163	Y
F044911	Metagenome	153	Y
F082346	Metagenome / Metatranscriptome	113	Y
F091924	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100413212	F044911	GAGG	MTPAELLHTNAARYATNRKNAYIEAMKRGDVDHMSEQALNGKWLAHYEGYREGYWVATGDNKFTTDPLKEKP
Ga0247723_100413213	F007518	AGGAG	MTEWTSEEDEAFNDVEKHSNLGKQILRELGQPYHYDLFVSPSQRNQVLEEVALEFDKMTNFGDTAASFAVFVRGMKQ
Ga0247723_100413214	F091924	AGG	MTEQIWEADWINENPELANKAITELQTQVQELESKLKHANNKIAKLESQNKEYKLTIKDMDRRIMRGLKD
Ga0247723_10041323	F082346	AGGA	MIRFSKENLLTMLQNKIIDMESIWGFVPDNGTNQIKDKTEFDRVVAYGEYNSLLEVYESIKNGNYFI
Ga0247723_10041328	F039525	N/A	MSETIMSDYIKGFDAGVNCVLTEIQRLEKIGPISLDQLIKHLDPQLDQKTAPKPDKGSP