NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003890

Scaffold Ga0247723_1003890


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003890 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7270
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039985Metagenome / Metatranscriptome162N
F044360Metagenome154Y
F052463Metagenome142N
F056414Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100389010F044360AGGAGMATKKLLETDVYPSDRFKVFEHSLMVEMETAKMEHEKVWGIDRVIDLVEPEFRRKVSAQRERIWEASQARDEERLEKAIKGMIAAYKALTRWATEAGIEQMPKIDCMEHRMGDGSLMVIVRDKQMATWYDQFHKLPANRSVWTLEELEVVMNSKTLTQVREIKAAIPGTRMIPIQPQGSSGFEDMENDIDISKPFKGGKMFDTKAAERDKNERRK
Ga0247723_100389011F052463GGAGGMPGNPKVKADLALLEDLDAELVLSMFEEGRSKADICRGLGIGRRALDRWIDENDYHSIITRARVEAASHLACETLTIADGMDVDNAQRDVQRIRTRQWLAERWDRKTYGTEKANQVNISIQGLRMEALRHVEVVEELSTDRMQKLSTEPVQLPND
Ga0247723_10038903F056414GGAGMKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPEAFLRESELDQRDFYHQPMAVHRSYVERFLPRRREQDNEQRQIMEQNHYLTTTYQIGVGA
Ga0247723_10038908F039985AGGAMLNLSSNSGSGNSYIRFAPQANAWTNRDGDEIQLKKVVMDLDTVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAASDNFGKLPVIEYVNSTPEKVGKGNTRVPNFKLVSWVARPAGMDADGGEFAEPEPAPAPVRKAAKPAPAPVMDDEEFF
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