Scaffold Ga0247723_1003876

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1003876
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7284
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005563	Metagenome / Metatranscriptome	396	Y
F014503	Metagenome / Metatranscriptome	262	Y
F024537	Metagenome / Metatranscriptome	205	Y
F031788	Metagenome / Metatranscriptome	181	Y
F064668	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100387615	F005563	N/A	MIDYHEAVREMHKGNVVKYVGTVNGNVVSSNGASFCMCRGCIFLFDDGAIKWNKLGYMVYDPDFRYELTGETVDPRAWKPERNRDRKDIKSKLGYSRVGLGNV
Ga0247723_100387619	F064668	AGTAGG	LYETFSKWDVPRDFADPMANYLVYGYEPGGCFTSVLANDFFAAMQRSHPANTIEAFKCLVGWINDCMPPEAYSSYNRVSEWLHLNEGNRRAILEKYELIYTEQEEVMLALRDESTTEPIL
Ga0247723_10038764	F031788	N/A	MAIIYKPMDMFPNVQVPVLHKVVYAHTVDGVLAAYQRSYKDHLVDEWLKENCRSPYYRSPGYLTEKFIQFEDDAEAVVFALKWGI
Ga0247723_10038765	F024537	N/A	MTLEEEILNKAGKELAREIDREVLWGMLKDLGWRRVMLDRFTDNNHAVDITNWLALHCNHAFERSGADFIFESEVDAVNFTLRWQ
Ga0247723_10038769	F014503	AGGCGG	MRKTSVHHWRFDDGTKPINPGNQFGESFVPRGWYCWVYPSDDQEFQEWMSRMCPTTDITHRFNSGDPMWTVYISDDAEATLFQLKWL