Scaffold Ga0247723_1003771

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1003771
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7421
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013085	Metagenome	274	Y
F016809	Metagenome / Metatranscriptome	244	Y
F018537	Metagenome	234	Y
F018924	Metagenome	232	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100377118	F016809	N/A	MSKTNEEFMKQQLTGSIGGDEDFLYEQYLAQEKMNEEYWQWKSVQSHSIFPDDMEYDDEYYKSSYLPTPEEEAENFKQIKQHGHS
Ga0247723_100377119	F013085	N/A	MDILNEIIEASNHMIDALEESDFFLENPFLEQIPLKRALQIRMQQKWEQEDDMFLTDEEFLDVCQSVSNNEIGKTIEDLVDKGALNMSINEDGEIVYSANKDYEWEKDEEEDL
Ga0247723_10037714	F018537	N/A	MASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKRWSKSRQNDVPWKVAQYIDIYLHAANPNRIRISQKKGMERKNLSLSDKNVIIARTLGSMGYSLADGVKHTQQSHSSSPLMAIMKLQYQTQMQDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNKVSFSQLKSHYDIVMRGNATTQKGGSFIHHLHSLIDMRNAIGRRCGRYLYKDTDGKYKVSNI
Ga0247723_10037715	F018924	N/A	MENIKLVTYKLKQMTNSEKAIAQLFGVLCSIVKSEHTPQATKQATISTFQHLIGEEGSPFLNDELIQLSTAMDSEMQSIVRQLNGDRILNNVLTNNINLN