Scaffold Ga0247723_1003758

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1003758
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7428
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F055450	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100375817	F055450	GGAGG	METNKRLVGAAKQAVRQRNYRRARDRALIRLAHLHPDTYKQLLEMEKKADEQEGKTWIDLDGNTVPVVGVRVRTADGRGGPSLKETIDKGTNEGNDGGEA
Ga0247723_100375818	F017972	GGAGG	VRTKHLQLVTHEHSATPKVKRDVSSPFGPVNPASTTLLAQETLRANQEVRLLELLNSLESVVDNLNYKSFTAYDTLVIAIEGVRVALSPIVTDEAGTDTL
Ga0247723_100375824	F009331	AGGAG	MICQNCSKAGEENTLTHYKRASNWHEKCDDKGCVCQHKTGPGYVRRGDSKVPLMRTQSP
Ga0247723_100375825	F016642	GAG	MIVKLSRDEVRVCTMLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGVNFEVRTVRTRDSVPFWSKDSGKIIVGTKILDEDYYSQVEVYGWCNPEEYAVAQYRDETIGGWRVPVTELKEF