NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003728

Scaffold Ga0247723_1003728


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003728 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7467
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003459Metagenome485N
F003660Metagenome / Metatranscriptome474Y
F005845Metagenome / Metatranscriptome388Y
F009318Metagenome / Metatranscriptome319Y
F046907Metagenome150Y
F098895Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100372816F009318N/AMHRFLLLLLLTSCTNDRPWRVIEVRPKGDACEYVLSRSNGFGPQIKIKTAPCGKYQLFQTINQFK
Ga0247723_100372819F005845N/AMKTTPTDFRRWQIHIRKECVNCSRPDHSETIKAWSVNWTLLGRILQAKNA
Ga0247723_100372820F046907N/AMPERGTPVLITDKEGMQIVAWIPYGQDVWCSENHTWFTHEVNYW
Ga0247723_10037285F003660N/AMNHETKTKLKAALATGYIVLTTCLGIAFFGRFFLAIITL
Ga0247723_10037287F098895N/AMANLLTKCNADVYKAILDKKSEQPVIGEKLISILQNCEEYIDLTCSDMLWFSAYLPWPIWDRKIHTFHLLFQSQQTTQMP
Ga0247723_10037288F003459N/AMNHLVTIPKSDISKQDIADIAAGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGSLTPDYQHDQQWSDLQASMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKTS
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