Scaffold Ga0247723_1003708

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1003708
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7500
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034854	Metagenome / Metatranscriptome	173	Y
F060728	Metagenome	132	N
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F086833	Metagenome	110	N
F100702	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100370811	F060728	N/A	MSQKGRPVVEGSARQARLAARAARVAANGGVIKRGRPSKPKAEQAEVVEADVNQAEVEQAEMTPEA
Ga0247723_100370814	F086833	N/A	MNKLAELLGLKAKIAELENEINNESITFTKEELIEFTKTISNAVANGVKFELSKKDNFDFGSALYTKRNSDFMGGLEVKVSRGRVLSEVVDSIDWVLDDENVESVVETVLEGLGK
Ga0247723_100370815	F034854	N/A	MTVQELIDQLTELKEQGHGEMELVLSVTDHTDWEYNFEFPGFDIGNVFDDDFDDLTDYGICEISI
Ga0247723_100370817	F100702	N/A	MEDIFKEIKTKVASLMMEQKTLWESTYKDRVATELERQTYQEYADKMDKEIKKMIPESERLTIELTGCAKGDLSHYDIEDSLRTVFKAGEGIQYDSEGGQFWVYVKSSLVQPVLRHIDYHFPNQIRLYVSINKYADNPWFQNWTQARKYLETEVGA
Ga0247723_10037084	F085381	N/A	LALGGQDIIFRLIIKTDNMKTVLEQLMELKDKISAIEIAVCGETICSDGACGCGCDESPVEVEDEGPEIDSAGFSKEDRVIDGQYMVTEDNKYAGHVHLTRAEMIDFATRLTERVIASVKEAVTDMELNADDVVEIELNSWSKTIEVELDNNTLANNVNSEIEDAINLDPDSISDEIDDIFGDMYLERIS
Ga0247723_10037086	F078411	AGG	MDYNKHTDEVLERLQAHQILEILATANKSIEQALKQIQELEHNSMMFLDMRPTREIMDDINALHLHLHFLDSAKSFAKNEIHEIGFYLN