NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003521

Scaffold Ga0247723_1003521


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003521 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7758
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009599Metagenome / Metatranscriptome315Y
F010227Metagenome / Metatranscriptome306Y
F010749Metagenome / Metatranscriptome299Y
F011368Metagenome291Y
F016962Metagenome / Metatranscriptome243Y
F032651Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100352116F016962N/AMDMIELIIVGLVGILIGWTASKRVHLDGFRQLLRALKVTEEDLLRAMIKIQSREWQLEDPEGTKDDAIVDVKLEQQGTQIFAYRKSDDQFLAQGSDADSLIERLNQNLTPCRVVVAQEDGADLLQKRNT
Ga0247723_100352117F010227AGGAGMQATTFNVSDKLTLAGTDTDTDSISTTYNCNVEVQLAGDSIWDCELEAVTVTSIHIHENFWEDTSTVHIAVCYNVDGDAEYEDSWRLYTDSGFSDAISALLGTAVDFTEQGMQEDGMASMEL
Ga0247723_100352118F032651AGGAGMKVKVVNIEDGGFYKDAYVSGNCVKVTLRKGKAIASCEQILIWDEEYAEDCFEEWKDCALAGEAGYTYTA
Ga0247723_100352124F010749N/AMKKFTFWRNAIISELYVVEAATEEAAREMLQNGEVEVFNEEWMDWATDDFELEHVEIIDPLYRMVKDFESVDKLVE
Ga0247723_10035215F011368N/AMNHTLAHRDITGHHLSPGDHCLVTEHNRLILARVVQVYDTSNQVQLQPVRSDAGGRRSTPSLKKIRRECYNVYRITDTEITMSILRGAI
Ga0247723_10035217F009599AGGMIKLEGLSKQDVQICRLLWNCDSIEAVDAMVAAMPPAYKKRAVSMRELMTAAQLDTVEDIHADIPALLQRISAG
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