NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003470

Scaffold Ga0247723_1003470


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003470 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7848
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F000980Metagenome / Metatranscriptome814Y
F007644Metagenome / Metatranscriptome347Y
F034924Metagenome / Metatranscriptome173Y
F035764Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100347012F034924GAGGLPIYRVFGTKYQNYYTIVSAADEYQAAEIANLRPSTDWDSIPTDDEIEATDVFLNEDTEIDLQVNM
Ga0247723_100347017F007644GGAGGLTKSSKFLEYMKLHLISLEQDKEKVSPNDEYSRCVVAGQIEATRHLLSVATDIMNDSNERVYE
Ga0247723_100347019F000868GAGGMSDPHGIIGIYRKGGSKMSFLENENQMVIDATYSEIGEMLVEDWVNANLDEGQMYADFRFAEMSDSNYLKGRFNLFYDLNKGDQYYLEYDEEA
Ga0247723_100347025F000980N/AYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGNNCTLLSVEDATIPYTDTPITETKGNEMEDATISTTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLNGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENDYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0247723_10034705F035764AGGMIDWLVNRLFWWTPLRTALLAEATFYNSMTTLLKDPEAMKTASSFWNEGDGWRGWTIEGDKYYFNDVPEHDMMGSIESLEEMHEQRSL
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Institute for Fundamental Biomedical Research
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