NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003276

Scaffold Ga0247723_1003276


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003276 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8171
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009267Metagenome / Metatranscriptome320N
F011222Metagenome / Metatranscriptome293N
F018136Metagenome / Metatranscriptome236N
F023103Metagenome211N
F035667Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10032763F018136N/AMISDATYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHAALFAS
Ga0247723_10032765F011222N/AMPLAPRLKGVAFLYMDCNIKFFHTINLKAAVALATLNFKMNKPPVTRLVRTDGKESTEFWFEGVNDKGQDASQVYRQMTKEGDELEAKEPENPICYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISEHASDKTKQEMTRFLK
Ga0247723_10032766F009267N/AMKKTQNTDLVKDDEILRIQAMEDGPKKVNGRTLRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPISMIRGAVNDRDTFINSVDSWIEKNMKHHHETTGMSEAMGVAFDLYNASSPSSEGGEGSGSGN
Ga0247723_10032767F035667GAGMEELPFAAGLQILHADDYVNGRSFAWANNKASVDIDALASIEATLAKYGKV
Ga0247723_10032768F023103GAGGMAKFKFESLKFEQIMKDYAEIRAVTIPDAVMLNARLLCVELARRTQPFGNDDTSGKTRVKNDIGKIIKPPVQLLAMANKVENKKIGKRLKLLIMNQRYDVVETIFRNLGFLNKWTGLEFLDSKSSIKTHHQDARVNPTGRTKTKGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPPWVKKATRSGSGNVYDLTGNKKNPMVLITNNVPWVSQILPVSEQLNALSVVATKMRNQMNRILKKRQKTLTET

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