NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003207

Scaffold Ga0247723_1003207


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003207 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8293
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011646Metagenome / Metatranscriptome288Y
F014714Metagenome / Metatranscriptome260N
F018703Metagenome233Y
F022400Metagenome214Y
F102505Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100320715F011646AGAAGGMSSVVELRNGSVKRIIFYEVADPQNIAVWGGESALDALKWYRNSPTGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMERWGN
Ga0247723_100320716F018703AGGTGGLSKTERRIETAKAQAVRRRNYRRARDRALARLSRDYPNVYRNYLEEEIATDDQMGKKWLDIAGNTKSTSSRTR
Ga0247723_100320717F022400AGGMRKTITKSSQRTTLRLVSGGVGESGSASSPFGPLKVGLIISQRTNEDQVLTELLNSLERQIADLSIRSCEVLNIFLSDTKHLVRRTSSFSRTDITDETP
Ga0247723_100320720F014714AGGTGGLGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLSTIPQPKWADKWLPITTEFANKASRTKLVGFLKLEDGILF
Ga0247723_100320726F102505GAGGMLVLNLALNMLKELQMRKSSLDLYDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMTPVPEGIITTTDILQPVVEEVVPVIEEVKEEE
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