Scaffold Ga0247723_1003093

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1003093
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8465
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F009461	Metagenome / Metatranscriptome	317	Y
F013618	Metagenome	269	N
F017290	Metagenome / Metatranscriptome	241	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10030931	F017290	N/A	IMATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTMEGEAYKTTNISGTFQLDMLADWGKANSVCEALWAAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS
Ga0247723_100309314	F009461	N/A	MNINGITILWFIIATGLLAYAFSLWQSEIYNRGYWRGRAMGWDMHRRMTNIKQQSDEVFDYDKN
Ga0247723_100309316	F002357	GGAG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDATDSAPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKAGSKSAQIETILRDSFEADKPKDPVVWSVGEVVDQIASSIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKACEPKWAKLTANGKWYFEGGE
Ga0247723_100309318	F002162	N/A	MPNYDYECDGEGLSIVLDLPMEHEIPCCQVCGAKLRRVYTAVPAIFKGTGWAGKSG
Ga0247723_10030935	F013618	AGG	MTVFTPDWKLTINAVEYTNVAISDIAHQAGREDIYSQPNPSYLQIELVALNNENYNLQVNDGITLQVKDSTNTYRTLFGGNITDITTEVATASSIAETFTYTILALGSLAKLPKVIYNGTLARDDDGDQIYELLSDLFLNNWNEVPAAKTWSGYDATTTWANAENVGLGEIDRPGVYELENRTADPDTTYNIASLIANSALGVLYEDNEGRISYADTTHRQNYLGNNGYTEISANTAIGAGLKVLTRGADVRNEIILNYGNNYGSQKTAIDLTSIAIFGYRGETINTVLHDATDAQAVADRFIALRSYPRALFDSITFPLTNSAIDDADRDALLQIFVGQPMRITDLPVQIAPTEQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALAWDQVSASEAWNTLSAILTWENAIGAVA