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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028025 Open in IMG/M |
| Scaffold ID | Ga0247723_1002909 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8797 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (88.89%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006587 | Metagenome | 369 | Y |
| F012016 | Metagenome | 284 | Y |
| F014840 | Metagenome | 259 | Y |
| F029418 | Metagenome | 188 | Y |
| F034908 | Metagenome | 173 | Y |
| F043777 | Metagenome | 155 | Y |
| F050979 | Metagenome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247723_100290916 | F034908 | AGGAG | MAKFSVVIEVSMDDTYLKQVETWGVEPSDHVATILSETAREKGLVVKASVLEVEHSLFDRQKKYADHLVQADAYNDLENEIIARACVGGVCED |
| Ga0247723_100290920 | F029418 | GAG | MMTPDEKKQKFEEDLIQVAVAEYYAYVDDCNAKNPLSRVRSEKDSRMFYYAMRMGVLRGINFATNQYMQSLKNFEEGKKDGR |
| Ga0247723_100290925 | F043777 | GGA | MKLIKGTDIIDNSPNEKAGELAEAIFDDVVFLLDLEEKCITEDEDGNSCNTELGQDLFNGIYEQCMAYFERENDE |
| Ga0247723_10029095 | F014840 | GGA | MIPFSYAVIDSDGEVIRQYRWSVKEAKWHKDQGKNVVKLDKPIEVKEDLMALVGECLF |
| Ga0247723_10029096 | F050979 | GGAG | MATQQIHKSKRHANPLKTKTGKDRLKALTLKVLYEMLDKVTEVGKKRAKIAKEIARREVK |
| Ga0247723_10029098 | F006587 | GGAGG | MDSNKYEGTGYVIVGFIVGALLTWGVMQSIHAQKKYSMNLKCIQGELYEEIKPNFYVKSHLECFEQRSF |
| Ga0247723_10029099 | F012016 | AGGTGG | MQETLKQPYAWSTEEFNVNGDLVWSSITQFRPKELSWIRDLPNKKHYITITPLYKDESKAEKITGIKSYKESTQKMMEAYNGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |